Report for Sequence Feature Glyma17g37430
Feature Type: gene_model
Chromosome: Gm17
Start: 41190013
stop: 41191959
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g37430
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G75540 AT
Annotation by Michelle Graham. TAIR10: salt tolerance homolog2 | chr1:28366059-28367398 FORWARD LENGTH=331
SoyBase E_val: 4.00E-81 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009641 GO-bp
Annotation by Michelle Graham. GO Biological Process: shade avoidance
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PF00643 PFAM
B-box zinc finger
JGI ISS
UniRef100_D9ZIW4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: COL domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIW4_MALDO
SoyBase E_val: 3.00E-97 ISS
UniRef100_UPI000189D244 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000189D244 related cluster n=1 Tax=unknown RepID=UPI000189D244
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g37430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g37430
Paralog Evidence Comments
Glyma14g40650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g37430 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g255100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g37430
Coding sequences of Glyma17g37430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g37430.2 sequence type=CDS gene model=Glyma17g37430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGGCTCATTTATCATAGTAGTGCTTCCTCCTTTACCATTTGACCATATTTATCCATCTCAATCACTTCCCACTTTTTATGAGCATTGGCCAACCCCCACGCTTCCTTTATTCTCCCTCTCAAGCTTCAAGCTACTCACACCAATGAAGATCCAGTGCGACGTTTGCAACAAACACGAGGCCTCCGTCTTCTGCACCGCCGATGAAGCCGCCCTCTGCGACGGCTGCGACCACCGTGTCCACCATGCCAACAAACTCGCCTCCAAACACCAACGCTTCTCTCTTCTCCGCCCTTCTCCTAAACAACACCCTCTCTGCGATATTTGCCAGGAGAGAAGAGCCTTTACATTCTGTCAGCAAGACAGAGCGATTCTCTGCAAAGAGTGTGACGTGTCAATTCACTCTGCCAACGAACACACCCTTAAGCACGATAGGTTCCTTCTCACCGGTGTTAAACTTTCTGCTTCTGCTATGCTTCGTTCGTCAGAAACTACCTCTGATTCAAACTCAAACCCTTCTCTTCTTAACTTTTCACACCAAACAACATTACTACCTCCATCTTCCACCACCACCACCACCACCAGCAACAACAACAACAACAAGGTTGCTGTTGAAGGAACTGGTTCAACTAGTGCTAGCAGCATATCGGAGTATTTGATAGAGACTCTTCCTGGGTGGCAAGTTGAAGACTTTCTTGATTCATATTCTGTTCCCTTTGGTTTCTGTAAGAATGATGAAGTGTTGCCACGGTTTGATGGTGAAATGGAGGGGCATCTGAGTTCTTTCTCAACCGAGAACATGGGGATCTGGGTTCCTCAAGCGCCACCAACTCTTATGTGTTCTTCACAAATGGATCGGGTGATAGTTCACGGTGAGACCAATATCAAAGGTAGCAGCAGATCAAGGTTGAAGGATGATAATTTCACTGTTCCACAGATTAGTCCTCCTTCCAATTCCAAGAGAGCCAGATTTCTGTGGTAG
Predicted protein sequences of Glyma17g37430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g37430.2 sequence type=predicted peptide gene model=Glyma17g37430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDGSFIIVVLPPLPFDHIYPSQSLPTFYEHWPTPTLPLFSLSSFKLLTPMKIQCDVCNKHEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLLRPSPKQHPLCDICQERRAFTFCQQDRAILCKECDVSIHSANEHTLKHDRFLLTGVKLSASAMLRSSETTSDSNSNPSLLNFSHQTTLLPPSSTTTTTTSNNNNNKVAVEGTGSTSASSISEYLIETLPGWQVEDFLDSYSVPFGFCKNDEVLPRFDGEMEGHLSSFSTENMGIWVPQAPPTLMCSSQMDRVIVHGETNIKGSSRSRLKDDNFTVPQISPPSNSKRARFLW*